Package: ComICS 1.0.4
ComICS: Computational Methods for Immune Cell-Type Subsets
Provided are Computational methods for Immune Cell-type Subsets, including:(1) DCQ (Digital Cell Quantifier) to infer global dynamic changes in immune cell quantities within a complex tissue; and (2) VoCAL (Variation of Cell-type Abundance Loci) a deconvolution-based method that utilizes transcriptome data to infer the quantities of immune-cell types, and then uses these quantitative traits to uncover the underlying DNA loci.
Authors:
ComICS_1.0.4.tar.gz
ComICS_1.0.4.zip(r-4.5)ComICS_1.0.4.zip(r-4.4)ComICS_1.0.4.zip(r-4.3)
ComICS_1.0.4.tgz(r-4.4-any)ComICS_1.0.4.tgz(r-4.3-any)
ComICS_1.0.4.tar.gz(r-4.5-noble)ComICS_1.0.4.tar.gz(r-4.4-noble)
ComICS_1.0.4.tgz(r-4.4-emscripten)ComICS_1.0.4.tgz(r-4.3-emscripten)
ComICS.pdf |ComICS.html✨
ComICS/json (API)
| # Install 'ComICS' in R: |
| install.packages('ComICS', repos = c('https://yaelsteu.r-universe.dev', 'https://cloud.r-project.org')) |
- DCQ_mar - Shared Immunological datasets
- eQTL_res - Example datasets for runnning vocal
- gBXD - Example datasets for runnning vocal
- immgen_dat - Shared Immunological datasets
- lung_dat - Example datasets for runnning vocal
- lung_time_series_dat - Example datasets for runnning dcq
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 years agofrom:3e0b1f9fcc. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 27 2024 |
| R-4.5-win | OK | Oct 27 2024 |
| R-4.5-linux | OK | Oct 27 2024 |
| R-4.4-win | OK | Oct 27 2024 |
| R-4.4-mac | OK | Oct 27 2024 |
| R-4.3-win | OK | Oct 27 2024 |
| R-4.3-mac | OK | Oct 27 2024 |
Dependencies:codetoolsforeachglmnetiteratorslatticeMatrixRcppRcppEigenshapesurvival
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Computational methods for Immune Cell-type Subsets | ComICS-package ComICS |
| Shared Immunological datasets | DCQ_mar immgen_dat |
| DCQ - Digital Cell Quantifier | dcq |
| Example datasets for runnning dcq | lung_time_series_dat |
| Variation in Cell Abundance Loci | vocal |
| Example datasets for runnning vocal | eQTL_res gBXD lung_dat |
